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Systematics |
2Department of Ecology and Evolutionary Biology, University of Michigan Herbarium, 3600 Varsity Drive, Ann Arbor, Michigan 48108-2287 USA; 3Molecular Systematics Section, Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3DS UK
Received for publication May 29, 2003. Accepted for publication August 29, 2003.
| ABSTRACT |
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Key Words: Bergia Elatine Malpighiales ndhF Peridiscus PHYC Saxifragales Whittonia
| INTRODUCTION |
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1300 species of trees, shrubs, and vines found in the tropics and subtropics of both hemispheres. Approximately 85% of the diversity of the family is found in the New World. The monophyly of Malpighiaceae is well supported by morphological (Anderson, 1979
Malpighiaceae are characterized by many autapomorphies, making it difficult to identify their closest sister group. Especially distinctive are their unusual floral morphology (Anderson, 1979
, 1990
; Vogel, 1990
; Fig. 1a, b) and the presence of unicellular T-shaped hairs (see Fig. 1c). They share a suite of floral characteristics including clawed (or paddle-shaped) petals, one of which is oriented out of the plane of the others (the "flag" petal), and sepals with paired, abaxial glands that produce oils (in New World taxa) or nectar (in some Old World taxa). In its most characteristic New World form (e.g., Fig. 1a, b), this floral morphology is associated with pollination by oil-collecting anthophorine bees (Vogel, 1974
, 1990
; Anderson, 1979
, 1990
; Neff and Simpson, 1981
; Taylor and Crepet, 1987
). Neotropical Malpighiaceae appear to have coevolved with these insect pollinators, and this may partially account for the greater diversity of New World species relative to Old World species. Until the sister-group relationships of the family are clarified we cannot begin to evaluate the hypothesis that a shift in species diversification was associated with these novel floral structures associated with the family (e.g., Guyer and Slowinski, 1993
; Sanderson and Donoghue, 1994
; Mooers and Heard, 1997
, 2002
; Sims and McConway, 2003
).
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The aim of this paper is to document the sister group of Malpighiaceae, which will help set the stage for future investigations examining diversification patterns within Malpighiaceae relating to floral characters that have long been thought to explain the neotropical diversity of the family. We have collected new data from the nuclear, protein-coding, phytochrome gene, PHYC, and the plastid genes ndhF and rbcL from species representing all families within Malpighiales (APG, 2003
). These genes have been used for examining infra-familial relationships of Malpighiaceae (Cameron et al., 2001
; Davis et al., 2001
, 2002a
, b
; Davis, 2002
) and were thought to be useful for examining phylogenetic relationships among families in Malpighiales. In addition, we obtained recently collected material of Peridiscaceae and included it in a combined analysis using the Soltis et al. (2000)
three-gene matrix to infer their phylogenetic placement.
| MATERIALS AND METHODS |
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We sampled ndhF, rbcL, and PHYC from species representing all of the families of Malpighiales (APG, 2003
; Appendix 1). The sampling strategy was guided by several recent phylogenetic analyses based on rbcL (Savolainen et al., 2000b
; Chase et al., 2002
); rbcL plus atpB (Savolainen et al., 2000a
); and rbcL, atpB, and 18S rDNA (Soltis et al., 2000
; Wurdack, 2002
). Our goal was to maintain taxonomic compatibility with these earlier studies, especially with Savolainen et al. (2000b)
and Wurdack (2002)
, so that we can combine these data sets in the future.
We assembled ndhF from 65 species representing outgroups and all major families within Malpighiales (APG, 2003
). Five of these sequences were published by Davis et al. (2001
, 2002b)
. We obtained rbcL from 70 species from the same subset of taxa, most of which were published by Chase et al. (2002)
. Lastly, we sequenced PHYC from 51 individuals representing the same families described, five of which were published by Davis et al. (2002b)
.
We were unable to amplify PHYC or ndhF from the DNA of Whittonia guianensis Benth. used by previous authors, perhaps because only highly degraded DNA was extracted from this herbarium material. Preliminary phylogenetic analyses using fresh samples of Peridiscaceae (Peridiscus lucidus Benth.) in which this taxon was specified as ingroup placed it well outside of the core Malpighiales (APG, 2003
). As an additional assessment of the placement of Peridiscaceae we sampled the same material for rbcL (see Appendix 1 in the Supplemental Data accompanying the online version of this article), atpB (GBANK-AY372816), and 18S rDNA (GBANK-AY372815) and inferred its phylogenetic placement using the 567-taxon data set of Soltis et al. (2000)
. Analysis of this data set indicated that Peridiscaceae is a member of Saxifragales. In our final analyses of the ndhF, rbcL, and PHYC data, we used Peridiscus as an outgroup to Malpighiales, not as a member of the ingroup.
Broader, angiosperm-wide analyses (Soltis et al., 2000
, 2003
) of multiple genes have indicated that Celastrales are closely related to Malpighiales. We sampled five species of Celastraceae to use as outgroups (see Appendix 1 in Supplemental Data accompanying the online version of this article). Also, we included the non-rosid Dilleniaceae as an additional outgroup (Soltis et al., 2000
, 2003
; Savolainen et al., 2000a
).
Molecular and phylogenetic methods
Protocols for extracting DNA, amplification of ndhF and PHYC, cloning (for PHYC), and automated sequencing generally followed those reported by Davis et al. (2002a
and references cited within; but see also Davis et al. 2001
, 2002b
). Amplification and sequencing primers for rbcL, atpB, and 18S rDNA followed Chase et al. (2002
, and references within), Hoot et al. (1995)
, and Soltis and Soltis (1997)
, respectively. Nucleotide and amino acid sequences were aligned by eye, and the ends were trimmed from each data set to maintain complementary data between taxa. The ndhF, rbcL, and PHYC data sets were analyzed independently, as a single plastid (ndhF plus rbcL; plastid DNA) and nuclear data set (PHYC) and in combination using parsimony as implemented in PAUP* version 4.0b10 (Swofford, 2000
), with 100 random taxon addition replicates, tree-bisection-reconnection (TBR) branch swapping, and MulTrees in effect. Gap positions were treated as missing data; all characters were weighted equally, and character states were unordered (Fitch parsimony; Fitch, 1971
). Bootstrap support (BS; Felsenstein, 1985
) for each clade was estimated from 100 heuristic search replicates as described above, but with simple taxon addition in effect.
Due to the excessive number of trees and computational time searching on the three-gene, 567-taxon data set of Soltis et al. (2000)
, we held only 10 trees in each replicate. Similarly, bootstrap percentages were calculated for this data set using the "fast" bootstrap option. After we approximated the placement of Peridiscus, we reduced the data set to a subset of taxa representing its closest relatives (Saxifragales) and outgroups (Caryophyllales) based on the analyses by Soltis and Soltis (1997)
, Fishbein et al. (2001)
, and Soltis et al. (2003)
. Searches and bootstrap percentages for this smaller data set were conducted in the same manner as described previously for the independent and combined data sets.
Searches on the plastid DNA data set were conducted using only taxa sampled for both genes. Searches using the combined "expanded" plastid DNA and PHYC data included all taxa for which at least one gene was available. This ensured that all of the families within Malpighiales were sampled. Some PHYC sequences were difficult to obtain for some members of the order because it is likely that PHYC is absent from some families. Howe et al. (1998)
presented evidence that Populus trichocarpa Torr. and Gray does not have representatives of the PHYC gene subfamily; PHYC type genes were not detected by PCR, screening of cDNA libraries, or Southern analyses. It is not clear where this loss (or losses) may have occurred within Salicaceae nor how widespread it may be, but based on results from PCR at least some families closely related to Salicaceae have also apparently lost the gene (C. C. Davis, unpublished data); they include Achariaceae, Turneraceae, Passifloraceae, and Malesherbiaceae, which form a clade with Salicaceae (Chase et al., 2002
; Wurdack, 2002
; this study). However, we were able to obtain PHYC from at least one tropical member of Salicaceae, Dovyalis. This result was unexpected given the apparent absence of PHYC from Populus trichocarpa and families related to Salicaceae (S. Mathews, Arnold Arboretum, personal communication). It is possible that PHYC is present, but unamplifiable with our primers/protocols, in these related families, and the loss is restricted to a clade within Salicaceae. Alternatively, there may have been multiple losses of the gene within families closely related to Salicaceae. Outside of Salicaceae and their closest relatives mentioned, this does not appear to be a major problem, i.e., PHYC was easily obtained from other related families. None of the groups in which PHYC has putatively been lost are closely related to Malpighiaceae, which is confirmed by available plastid DNA sequences presented here as well as by broader analyses by Wurdack (2002)
.
| RESULTS |
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The bootstrap consensus tree generated from the independent data sets revealed no "hard incongruence" (Whitten et al., 2000
; Reeves et al., 2001
); that is, we found no strongly supported (
90%) incongruent clades between the independent analyses of the plastid DNA (Fig. 2) and PHYC (Fig. 3) data sets. We subsequently analyzed these data in combination. The combined 3428 bp long (3258 bp after trimming ends) "expanded" data matrix included 72 taxa (65 ingroup plus seven outgroups) and 1973 variable (1478 potentially parsimony informative) characters.
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90% BS (Figs. 2, 3), and the combined "expanded" analysis supports that same grouping with similar support (94% BS; Fig. 4). Resolution along the spine of the Malpighiales tree was poor in these analyses (Figs. 24). The sister to the Malpighiaceae-Elatinaceae clade is not strongly supported in any analysis, but in the PHYC trees Picrodendraceae are sister to this clade (Fig. 3; 60% BS).
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| DISCUSSION |
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Our study indicates that Malpighiaceae are not closely related to Peridiscaceae. Instead, Peridiscaceae are placed well outside of Malpighiales and should not be included in future circumscriptions of the order; they are members of Saxifragales (Fig. 5). Placement of Peridiscaceae in Saxifragales is not only supported by high bootstrap support (98%; Fig. 5), but also by the presence of a unique indel in the 18S rDNA gene found only among members of Saxifragales within eudicots, which is synapomorphic for the order (indel B, table 3 in Soltis and Soltis, 1997
). Additional data are needed to resolve the placement of Peridiscaceae within Saxifragales, but investigations (Fishbein et al., 2001
) on this group have indicated that resolving the higher level relationships within the order may be difficult due to their apparently rapid (and ancient) radiation.
Morphological synapomorphies for Saxifragales have been difficult to address conclusively, which makes it problematic to identify clear morphological characters supporting the placement of Peridiscaceae within the order. Performing such an analysis is outside the scope of this paper, but we did make some comparisons of characters (Cronquist, 1981
; Table 1) found in Peridiscaceae with those of two sets of families: (1) those to which Peridiscaceae have been previously suggested to have a close relationship, namely Flacourtiaceae (sensu Cronquist, 1981
), and (2) primarily woody families with at least some tropical affinities, such as Daphniphyllaceae and Hamamelidaceae. There are a number of characters among these two woody saxifragalean families that are similar to those in Peridiscaceae, whereas those shared with Flacourtiaceae in the broad sense used by most previous authors (e.g., Cronquist, 1981
) are as often as not also shared by families in Saxifragales (Table 1). It appears that Peridiscaceae are not out of place in Saxifragales, and we await the results of further phylogenetic and morphological studies focused on characters found in the families of this order, including Peridiscaceae.
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25 species and is most diverse in the Old World tropics, principally Africa and Australia (Tucker, 1986
The previous taxonomic classification of Elatinaceae reflects their uncertain phylogenetic position. Adanson (1764)
placed Elatine in Caryophyllaceae due to their possession of opposite leaves, small flowers, and tiny seeds. Several authors (de Candolle, 1824
; Bentham and Hooker, 1862
; Bessey, 1915
; Hutchinson, 1926
, 1959
) subsequently followed Adanson and placed the family in (or near) Caryophyllaceae. Others (Niedenzu, 1925
; von Wettstein, 1935
) suggested that Elatinaceae were instead closely related to Frankeniaceae and Tamaricaceace, a placement that has been justified on the basis of anatomical, palynological, and embryological evidence (Walia and Kapil, 1965
; Melikian and Dildarian, 1977
). This latter relationship was always doubtful, however, given the widespread distribution of characters supporting this hypothesis (Tucker, 1986
). Cambessèdes (1829)
and Gray (1849)
departed from all previous treatments and suggested that the family was instead closely allied with Clusiaceae sensu lato (s.l.; including Hypericaceae). Most modern treatments of Elatinaceae (Thorne, 1976
, 1983
, 1992a
, b
; Taktahjan, 1980
, 1997
; Dahlgren, 1980
; Cronquist, 1981
) have followed Cambessèdes and Gray by similarly placing the family near Clusiaceae s.l.
Recent phylogenetic studies (Savolainen et al., 2000b
; Chase et al., 2002
) have corroborated evidence by Cambessèdes (1829)
and subsequent authors that Clusiaceae and Elatinaceae are more closely related than either is to Caryophyllaceae, Frankeniaceae, or Tamaricaceace; both Clusiaceae and Elatinaceae are members of Malpighiales (APG, 2003
). However, whereas several studies (Savolainen et al., 2000b
; Chase et al., 2002
; Wurdack, 2002
) indicated that Elatinaceae are monophyletic, the placement of the family within Malpighiales has remained unclear. Savolainen et al. (2000b)
initially inferred the clade ((Malpighiaceae, Peridiscaceae) (Phyllanthaceae, Elatinaceae)) based on rbcL. Although there was BS support <50% for (and within) that clade, except for those clades uniting the three genera of Malpighiaceae (98% BS) and the two genera of Elatinaceae (54% BS), there was a weakly supported association of Malpighiaceae with Elatinaceae. In the recent analysis by Chase et al. (2002)
, again based on rbcL, Elatinaceae were placed in some of their trees as sister to a clade containing the clusioids (i.e., Podostemaceae, Hypericaceae, Bonnetiaceae, and Clusiaceae), but there was BS <50% for this clade, and the strict consensus of their trees left the placement of Elatinaceae ambiguous. In Wurdack's (2002)
broad, three-gene analysis of Malpighiales, which included the widest infraordinal sampling to date, Elatinaceae were paired with Malpighiaceae, but with only 51% BS support. Our study is the first to convincingly place Elatinaceae as sister to Malpighiaceae (Figs. 24). In all independent and combined analyses in our study, this clade is inferred with
90% BS support (Figs. 2 4).
Morphological evidence for the placement of Elatinaceae with Malpighiaceae
Part of the problem with estimating the relationships of Elatinaceae with any other taxon is that species of Elatine are almost entirely aquatic and herbaceous. Aquatic angiosperms represent a diverse assemblage of species, which have arisen from terrestrial ancestors as many as 100 times (Cook, 1999). The highly convergent and reduced nature of most aquatic plants has often made it difficult to interpret their morphology in a phylogenetic context (Philbrick and Les, 1996
). Gray (1849
, p. 15) commented specifically on this phenomenon in Elatine by suggesting that they "... are bland plants, destitute of any marked sensible qualities, as far as is known ..." The mostly temperate distribution exhibited by the aquatic species of Elatine has almost certainly biased perceptions of the family and may reflect a broader misconception that most members of Elatinaceae are temperate aquatic herbs. The center of diversity of Elatinaceae is instead found among the paleotropical species of Bergia (Tucker, 1986
; Leach, 1989
), which are mostly woody (many are recorded as shrubs) and are often found in drier or even arid, upland environments. They also tend to offer more obvious vegetative and anatomical characters for evaluation than the highly reduced morphology exhibited by many species of Elatine.
There are a number of morphological features shared by Malpighiaceae and Elatinaceae that may be synapomorphic for this clade. The Malpighiaceae characters summarized in Table 2 represent features that are found principally among members of the New World byrsonimoid clade (sensu Davis et al., 2001
), for which Anderson (1978
, 1990)
identified as putatively ancestral for Malpighiaceae. There are a number of parallels between some malpighs and many species of Elatinaceae. Most notably, they both have a base chromosome number of X = 6 (or some multiple of three or six, e.g., nine in Elatine or 12 to rarely 24 in some byrsonimoids), opposite or whorled leaves with conspicuous stipules borne at or between the petiole bases, unicellular hairs (apparently uniseriate in some Elatinaceae), multicellular glands on the leaves, and resin (Elatinacae) or latex (Malpighiaceae). However, given that the sister group to the Elatinaceae-Malpighiaceae clade is uncertain (Figs. 24), these features may be revealed to be symplesiomorphic in studies with increased phylogenetic resolution, or as the phylogenetic relationships of either ingroup becomes better resolved, especially for Elatinaceae, some of the features may later be revealed to be independently evolved in these two taxa.
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1300 species of Malpighiaceae vs. only 3550 species of Elatinaceae. Preliminary sister group comparisons of extant species diversity (Sims and McConway, 2003
2 = 3.679; df = 1; P = 0.05).
One scenario to account for this asymmetry might be that there was an increase in diversification rates associated with the origin of malpighs, attributable to their unique floral morphology and coevolution with neotropical oil-bee pollinators. An alternative scenario is that there was a downshift in diversification rates associated with the aquatic habit exhibited by some Elatinaceae. Sister-group comparisons that are based on standing taxonomic diversity like those of Sims and McConway (2003)
and others (e.g., Slowinski and Guyer, 1989
; Guyer and Slowinski, 1993
), however, are nondirectional (Sanderson and Wojciechowski, 1996
, and references within) and do not allow us to discern whether there has been an increase in diversification associated with the origin of malpighs or if there was a decrease in Elatinaceae (or if both may have taken place). Until we can localize the shift in diversification on the phylogenetic tree, it is difficult to invoke a deterministic ("adaptive") explanation to account for the observed differences of these two groups. Tests are available for identifying where shifts in diversification occur on phylogenies (e.g., Sanderson and Donoghue, 1994
), but they require at least a three-taxon tree. Until the sister group of the Malpighiaceae/Elatinaceae clade is clarified, this will remain problematic. Examining these questions will require a better resolved phylogenetic assessment of Malpighiales as well as Elatinaceae to determine when members of the family made the shift to being completely aquatic and herbaceous. In the latter case, the aquatic and herbaceous members of Elatinaceae may be more recently evolved, whereas the terrestrial and woody members might be plesiomorphic within the family.
Note added in proof
As this paper was going to press, V. Savolainen, M. Cheek and M. Chase (K) discovered that Soyauxia (a previously unplaced eudicot in APG II, 2003) was placed with high bootstrap support as sister to Peridiscus using the three genes, atpB, rbcL, and 18S rDNA. This taxon had previously been allied to Peridiscus and Whittonia by Sandwith (1962)
and Metcalfe (1962)
. In the future, Peridiscaceae should also include Soyauxia.
| FOOTNOTES |
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