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Systematics |
2Institute for Plant Sciences, Biodiversity and Plant Systematics, University of Heidelberg, Im Neuenheimer Feld 345, D-69120 Heidelberg, Germany; 3Institute of Botany, University of Agricultural Sciences Vienna, Gregor-Mendel-Str. 33, A-1180 Vienna, Austria
Received for publication April 1, 2003. Accepted for publication July 18, 2003.
| ABSTRACT |
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Key Words: biogeography Brassicaceae chloroplast DNA Europe isozymes Microthlaspi perfoliatum Pleistocene refugia Thlaspi
| INTRODUCTION |
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However, among plants, these studies mostly focused on perennial herbs and woody species, and in Europe annuals have been only rarely tested for geographic structuring of genetic variation, which led to phylogeographic hypotheses. Some of these few examples came from Arabidopsis (Sharbel et al., 2000
), Cochlearia danica (Koch et al., 1998a), or several Senecio species (Comes and Abbott, 2000
, 2001
).
The annual Microthlaspi perfoliatum is a representative of the genus Microthlaspi, which according to Meyer (1973
, 1979
) consists of four annual species, namely M. perfoliatum (L.) F. K. Meyer, M. natolicum (Boiss.) F. K. Meyer, M. granatense (Boiss. & Reut.) F. K. Meyer, and M. umbellatum (Steven ex DC.) F. K. Meyer. However, this classification is questionable, and on the basis of molecular data only M. perfoliatum and M. natolicum represent a monophyletic species assemblage (Koch and Mummenhoff, 2001
). Both M. granatense from the orophile vegetation from the Sierra Nevada in southern Spain to the Algerian-Moroccan Atlas Mountains (Galland and Favarger, 1990
) and M. umbellatum from the Gilyan Province in North Iran (Bush, 1985
) appear as paraphyletic taxa (Koch and Mummenhoff, 2001
). Taxonomical difficulties are obvious, and even for Iberian M. granatense mixed populations with polyploid M. perfoliatum have been reported (Galland and Favarger, 1990
). For this reason, the occurrence of M. granatense on Sicily remain unexplained until independent molecular analysis have shown its genetic relatedness to the Iberian-Algerian-Moroccan populations. Microthlaspi natolicum comprises four subspecies, two of which are found in Anatolia (subsp. natolicum and subsp. longistylum), one in Lebanon (subsp. gaillardotii), and one in Cyprus and the southern Sporades Islands (subsp. sporadium). Microthlaspi granatense is diploid, and dipoids as well as hexaploids of M. natolicum have been reported (Polatschek, 1983
; Koch and Hurka, 1999
). Microthlaspi perfoliatum is distributed all over Europe and consists of three cytotypes of which the polyploids (2n = 4x = 28 and 2n = 6x = 42) are widely distributed. Polyploid M. perfoliatum occurs also in all Mediterranean countries except Egypt and is extending to the Middle East and Central Asia (Jalas et al., 1996
). It also has been reported as introduced species from North America (Hill, 1982
), and a detailed overview of chromosome counts within Microthlaspi is provided in Jalas et al. (1996)
and Koch et al. (1998b)
. This is in sharp contrast to the local distribution of diploid populations in Central Europe (Koch, 1997
; Koch et al., 1998b
; Koch and Hurka, 1999
). However, in several populations the sympatric occurrence of different cytotypes has been reported (Koch and Hurka, 1999
). This finding raises the question whether these cytotypes are separated genetically and whether they can be distinguished morphologically. The application of molecular markers revealed some interesting findings. Polyploid M. perfoliatum has been constituted via hybridization and subsequent polyploidization between diploid M. natolicum and M. perfoliatum accessions, most likely before Pleistocenic glaciation processes started (Mummenhoff et al., 1997
). Accordingly, diploid and polyploid cytotypes are distinguishable by different chloroplast DNA haplotypes classes (Koch et al., 1998b
), and no ongoing geneflow between cytotypes has been detected (Koch et al., 1998b
; Koch and Hurka, 1999
). However, comparisons of different molecular marker sets revealed that gene flow involving different ploidy levels has occurred in the past after constitution of the different cytotypes, e.g., an Iberian hexaploid population has a diploid-related chloroplast DNA haplotype and a diploid-related nuclear ribosomal DNA operon (Koch et al., 1998b
), contrary to a set of allozymes typically found in other Iberian hexaploid populations.
The morphology of M. perfoliatum has been analyzed first by Jordan (1852
, 1864
), who described Thlaspi erraticum Jordan and T. improperum Jordan, respectively. Thlaspi improperum is identical to the taxon described first by Linné (1753)
as T. perfoliatum L. (Schultze-Motel, 1986
). Interestingly, Markgraf (1958)
proposed a more southern distribution of T. improperum than for T. erraticum, a pattern that also was found for chloroplast DNA haplotypes variation among diploids and polyploids (Koch et al., 1998b
). Nonetheless, Hess et al. (1977)
and Galland and Favarger (1990)
concluded for a larger European sampling that no clear separation between the cytotypes was possible based on morphological characters. In contrast, on a more local scale in Germany, a significant morphological separation between diplods and polyploids occurred (Koch, 1997
). The corresponding shematic fruit types are shown in Fig. 1a, b. The reason for this is simple. There are only quantitative characters, and the variances of this morphological character variation are much larger in the polyploids than in the diploid, and on a European scale, the diploids represent only one extreme of character variation also found in some polyploids.
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Therefore we have undertaken a study to investigate the genetic variation across an enlarged set of M. perfoliatum populations using isozyme analysis. Our aim was to answer or test the following questions and hypotheses. (1) Are there any centers of diversity or Pleistocene refugia shared by the different cytotypes or in agreement with other phylogeographic studies? (2) Is it possible to perform a comparative biogeographic analysis of the different cytotypes? And how are these scenarios embedded in and influenced by the hypothesized evolutionary history of polyploid M. perfoliatum? (3) Colonization routes should be formulated with a focus on postglacial recolonization of lowland regions in Central Europe.
In the past decade, amplified fragment length polymorphisms (AFLPs) (Vos et al., 1995
) have been introduced as a marker of choice to obtain nuclear-encoded polymorphisms, which have proven to be reliable and efficient for obtaining a high number of informative characters (Mueller and Wolfenbarger, 1999
). This marker system has been successfully applied in infraspecific phylogeographic studies in Europe focusing on Quarternary differentiation processes (Stehlik et al., 2001
; Schönswetter et al., 2002
, 2003
; Tribsch et al., 2002
; Koch et al., 2003b
). However, with the AFLP marker system, anonymous DNA fragments are analyzed without any information about fragment characteristics (intron, repetitive DNA, microsatellites, etc.) or loci and alleles. In contrast, isozymes provide a genetically well-defined codominant marker system solely based on coding DNA, but which might suffer from a lower number of informative characters. Therefore, we also address the question of whether isozymes could be analyzed in a similar way to that for AFLPs to obtain significant phylogeographical information.
| MATERIALS AND METHODS |
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Chromosome counts
Chromosome counts were performed using young root tips with a Giemsa staining procedure (Koch and Hurka, 1999
). However, diploid and tetraploid/hexaploid were easily distinguished by their isozyme patterns. Therefore, chromosome counts were only necessary to distinguish between the two polyploid cytotypes.
Isozyme analysis
The following isozyme systems have been studied: aspartate aminotransferase E.C. 2.6.1.1 (AAT), phospho glucomutase E.C. 2.7.5.1 (PGM), leucine aminopeptidase E.C. 3.4.11.1(IAP), and phospho glucoisomerase E.C. 5.3.1.9 (PGI). Detailed protocols are given in Koch and Hurka (1999)
, with the corresponding diagrams of allozyme distribution among the several loci of the different Microthlaspi taxa. However, in the polyploids, it was not possible to distinguish between duplicated loci.
Variation in cpDNA haplotypes
An extensive survey of cpDNA haplotypes based on restriction fragment length polymorphism (RFLP) data covered a broad range of polyploid Microthlaspi perfoliatum (Koch et al., 1998b
). However, diploid Microthlaspi perfoliatum from an assumed relict area in East Austria was represented by only one accession. To draw biological inferences, it was necessary to fill this data gap. Therefore, all populations from this study were scored subsequently for their cpDNA haplotypes. The experimental work followed Koch et al. (1998b)
. For the haplotype screening, it was not necessary to use the total set of 18 restriction endonucleases (Koch et al., 1998b
), but nine enzymes (ScaI, XhoI, PvuII, SmaI, PstI, SstI, HindIII, EcoRI, NcoI) were sufficient to detect the diagnostic mutations resulting in the different RFLP patterns of M. perfoliatum cpDNA haplotypes.
Data analysis
The allozyme patterns were analyzed based on relative migration distances, using an isozyme system elaborated previously (Koch and Hurka, 1999
). The occurrence of each allele was scored as an absent or present binary character, resulting in a 0/1 matrix comprising 45 different alleles from nine loci. Because each population consisted of totally uniform multilocus genotypes only (herein referred to as "haplotypes"), the Jaccard distance was used to measure interpopulational differentiation (implemented in SYNTAX 5.0, Podani, 1993). The corresponding distance matrix was used to perform a principal coordinate analysis (PCoA) using SYNTAX 5.0 (Podani, 1993). The results were visualized using SPSS version 10.07 (Chicago, Illinois). Based on haplotype data interpopulational differentiation and geographic structuring of the genetic variation was analyzed with an analysis of molecular variance (AMOVA) using ARLEQUIN 2.0 (Schneider et al., 2000
). The AMOVA estimates genetic structure indices using information on the occurrence of alleles, as well as their frequencies (Excoiffier et al., 1992
).
The number of rare alleles (fr) with a frequency less than 10% (considering all Microthlaspi perfoliatum populations [Koch and Hurka 1999
] and populations analyzed herein) and the number of private (or unique) alleles (fu) were counted for different regions after combining the corresponding populations. As an independent measure for regional interactions, the numbers of shared rare alleles between regions (fsr) were also counted.
To detect and visualize similar or even identical haplotypes among polyploid populations, a neighbor-joining tree of all haplotypes was constructed with TREECON version 1.3b (Van de Peer and De Wachter, 1994
) based on distances according to Nei and Li (1979)
. The bootstrap option was used with 1000 replicates to infer statistical support of branching patterns.
Mantel tests were conducted in two different ways. (1) The matrix of genetic interindividual Jaccard distances was compared with a matrix of geographic distances in kilometers (Mantel, 1967
), and (ii) the genetic distance matrix was compared to a model matrix of 15 geographical distance classes (Gabrielsen et al., 1997
; Stehlik et al., 2001
) to test the goodness-of-fit of the genetic distance matrix with a model matrix of distance classes. The distance classes were classified as follow: 1 = 050 km, 2 = 51100 km, 3 = 101150 km, 4 = 151200 km, 5 = 251300 km, 6 = 351400 km, 7 = 451550 km, 8 = 551650 km, 9 = 651750 km, 10 = 7511001 km, 11 = 10001250 km, 12 = 12511500 km, 13 = 15011750 km, 14 = 17512000 km, 15 = 20013300 km. All Mantel RM-values were calculated and Bonferroni-corrected using R Package 4.0 (Casgrain and Legendre, 2001
).
| RESULTS |
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Isozyme analysis
No within-population variation has been detected, and also the F2 individuals had the same multilocus allozyme pattern as the original F1 individuals. This indicates that all individuals were homozygous for all loci tested. Especially the polyploids with duplicated (tetraploids) or triplicated (hexaploids) loci exhibited total homozygosity. Accordingly, the allozyme patterns were coded as binary 0/1 matrix with each allele representing a homozygous locus. Because of the missing intrapopulational differentiation, each population is characterized by one single allozyme phenotype or "haplotype." Considering all data (Koch and Hurka [1999
] and populations analyzed herein), 51 haplotypes were distinguished. Two new alleles were identified with Lap24 and Aat33 from several polyploid Austrian populations and from population 168 (Croatia), respectively. The corresponding 0/1 data matrix is provided in the Appendix (see Supplementary Data accompanying the online version of this article) and isozyme haplotypes are indicated in Table 1.
The PCoA analysis of the distribution of the genetic diversity demonstrates that most of the variation within the data set is explained along the first three axes (axis 1, 53.9%; axis 2, 8.6%; axis 3, 6.5%). The two-dimensional plot representing the first two axes had a significant separation of diploid vs. polyploid populations. However, differentiation between tetraploids and hexaploids is not obvious (Fig. 2a). Similarly, there is hardly any clear signal within the polyploids to group them into different regions. In Fig. 2b several regions and the corresponding polyploids have been indicated.
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The overall mantel RM value calculated with genetic and geographical distance matrix for polyploid individuals only is 0.39 (P < 0.001), demonstrating a significant correlation between geographical and genetic distances, i.e., "isolation by distance."
The Mantel test for polyploids with distance classes (Fig. 5) reveals a significant positive correlation among populations separated by up to 1250 km. In most cases, the correlation is significantly negative from 1250 to 3300 km. The highest RM value was found in distance class 10 (7511000 km) (RM = 0.13, P = 0.001), the lowest in distance class 14 (17512000 km) (RM = 0.40, P = 0.001).
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A compilation of all cpDNA haplotypes detected so far is provided in Figs. 3 and 4 for polyploid and diploid Microthlaspi perfoliatum, respectively. Regional structuring was drawn in accordance with the isozyme data.
In summary, the distribution of cpDNA types among regions is in congruence with the isozyme data: e.g., the highest number of different S (S = southern) cpDNA haplotypes were documented for polyploids from Spain, a region for which also the highest allozyme diversity was scored. The remaining regions had less significant differentiation.
The cpDNA haplotype data of the diploid populations revealed that the type N3, which is rarely found in Germany and absent from France/Switzerland, is also present in eastern Austria, as is the more common N2 type. It should be mentioned that the cpDNA haplotype N4 from Germany (Koch et al., 1998b
) is also extremely rare, and it might be a matter of sampling to detect this haplotype in Austria. However, it must be considered that diploids in Austria are also rare, which reduces the probability of finding the N4 haplotype. The cpDNA haplotype N5, which is exclusively distributed in a diploid population from France, represents an intermediate haplotype (between S types of the polyploids and N types of the diploids). Interestingly, this type is most similar to plastome type S1 from polyploid populations from Spain (Koch et al., 1998b
), a finding that supports the interrelationship between these two regions and was also demonstrated by the isozyme data.
| DISCUSSION |
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All diploids carry a characteristic N cpDNA haplotype, and all polyploids can be identified by a corresponding S cpDNA haplotype (Fig. 6). The same strict separation is seen for allozyme haplotypes (Fig. 2a). However, potential geographical suture zones exist in the diploid refuge areas in France/Switzerland and Austria. The rare sympatric occurrence of different cytotypes within smaller areas or even within the same population have been described from France and Germany (Koch and Hurka, 1999
). However, genetic barriers are upheld by the selfing mating system, which does not propagate outbreeding or hybridization. Presently, this is clearly seen on the homoploid level with totally fixed heterozygotes for diploids as well as for polyploids. Consequently, it must be assumed that presently gene flow over ploidy levels presently plays no significant role, in accordance with the notion that no gene flow over ploidy levels was detected. Nonetheless, it is remarkable that especially between the Iberian refuge and the France/Switzerland region, close relationships based on shared rare alleles were observed (Table 3). Accordingly, the plastid type S1 from a polyploid population from central Spain represents an "intermediate" type such as N5 from diploids in France (Fig. 6). This finding indicates that hybrid zones had existed with low levels of gene flow over ploidy levels, which became extinct during the Pleistocene.
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The diploids are restricted to three areas, two of which, France/Switzerland and Austria/Croatia, can be regarded as Pleistocene refugia. The third area in Germany represents a postglacially colonized distribution range. Therefore, it can be concluded that diploid M. perfoliatum was forced into similar refugia such as polyploid M. perfoliatum, but the diploid populations did not occur in the three "main" refugia, Iberia, Italy, and the Balkans (on a larger scale).
Phylogenetic evidence and glacial refugia
The hybrid origin of polyploid M. perfoliatum has been demonstrated recently (Mummenhoff et al., 1997
). In this analysis, plastome types of the different cytotypes of M. perfoliatum resemble a monophyletic clade, and the plastome type of M. natolicum is basal to this clade (Fig. 6), indicating close relationships of the different cytotypes of M. perfoliatum regarding the maternally inherited chloroplast genome. However, sequence comparisons of the internal transcribed spacer region of the nuclear ribosomal DNA revealed that the sequence of polyploid M. perfoliatum resembles the original sequences of diploid M. natolicum and M. perfoliatum in a mosaic-like fashion (Mummenhoff et al., 1997
). A closer look at this mosaic indicates that polyploid M. perfoliatum shares 13 nucleotide positions with diploid M. perfoliatum and another 13 nucleotide positions with diploid M. natolicum. More importantly, all three taxa have also nine (diploid M. perfoliatum) or 10 (polyploid M. perfoliatum and diploid M. natolicum) unique characters not found in the other species or cytotypes. This finding led to two conclusions. First, all three taxa or cytotypes evolved mostly independently from each other after the hybridization had occurred, and second, the mutation rate is consistent for all three taxa. Taking a molecular clock into account, the accumulation of approximately 10 mutations along the 650-bp DNA fragment in each taxon resulted in a sequence divergence between the different ITS sequences of 3.1%. In recent studies of cruciferous plants, 1% ITS sequence divergence corresponded to approximately 0.5 to 1.0 million years (Koch and Al-Shehbaz, 2000
, 2002
), which indicates that the hybridization event dates back to the late Tertiary, therefore, prior to the Pleistocene glaciation and deglaciation cycles. This age estimate might be important to understand and explain the distribution of the refugia across Europe. It might be assumed that if a taxon had occupied all major periglacial refugia in Iberia, Italy, and the Balkans, this taxon should be as old as major Pleistocene glaciation and deglaciation cycles, which forced the species into these refugia. Unfortunately, there are not many time estimates of the evolutionary history of species analyzed for their Pleistocene refugia. Arabidopsis thaliana (Sharbel et al., 2000
), which was also distributed within these major refuge areas, diverged from its closest relatives approximately 5.8 million years ago (Koch et al., 2000
, 2001
), long before Pleistocene glaciation processes started. Similarly, Anthyllis montana diverged from its closest relatives at the Tertiary-Quaternary boundary (Kropf, 2002
; Kropf et al., 2002
, but intraspecific molecular differentiation might have occurred only in the late Pleistocene 0.250.66 million years ago (Kropf, 2002
).
In the case of polyploid M. perfoliatum, the long species history enabled the plant to expand through most parts of southern and southeastern Europe. Eventually, this colonization process was enforced by Pleistocene climate changes. However, during this period of time, the same climatic factors led to the extinction of most of the genetic variation in diploid M. perfoliatum. By the end of Pleistocene glaciation and deglaciation cycles, this cytotype was forced into two refugia, of which the eastern Austrian-Croatian refugium correlates to some extent with the Balkan refugium, which was found in many other plant species (e.g., Trewick et al., 2002
; Palmé et al., 2003
). The second refugium in southeast France has been also described for other species such as silver birch (Palmé et al., 2003
) and white oaks (Petit et al., 2002
). However, for the situation in white oak, the recolonization of France from Iberia is superimposed on the present day diversity in France (Palmé et al., 2003
). This fragmentation and extinction model for diploid populations of M. perfoliatum in general is also supported by the lack of molecular variation within the regions, which is also true for its morphological variation.
Postglacial colonization of Central Europe
Isozyme and cpDNA haplotype data indicate that diploid M. perfoliatum postglacially migrated to Germany and adjacent regions from both refugia, Switzerland/France and Austria. The same is true for the polyploids.
The neighbor-joining distance tree of isozyme haplotypes from polyploid populations in Germany, the Czech Republic, Belgium, and Sweden revealed five different types distributed among 12 populations analyzed (distance tree not shown). Nearly all of them are most closely related or even identical to haplotypes from Austria or Hungary with one exception, population 75 near Pettstadt, Germany, with a haplotype close to population 103 from France (Messigny, Côte d'Or). This finding indicates that most polyploids invaded from Austria. It is unknown if this colonization is recent and caused by human settlement or if colonization occurred naturally in postglacial times in lowland regions along the Danube River, which might have provided appropriate base-rich, open pioneer habitats. It is noteworthy that in Germany, Great Britain, or Sweden diploid as well as polyploid populations of M. perfoliatum are restricted to limestone areas with corresponding habitat types such as calcareous grassland or disturbed road sites or other edges at agricultural fields or under woods. However, in most floras, M. perfoliatum is treated as native (Lid, 1989
; Stace, 1991
). Most of these habitats have been created or maintained through human activity, and we can at least conclude that M. perfoliatum did not have a high invasion capacity into the northern territories.
| FOOTNOTES |
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4 Author for correspondence and reprint request (marcus.koch{at}urz.uni-heidelberg.de
) ![]()
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