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Population Biology |
2Programa de Recursos Genéticos, Instituto Nacional de Investigaciones Forestales, Agrícolas y Pecuarias (INIFAP), Apartado Postal 112, Celaya, Guanajuato 38000, México; 3Departamento de Ecología Evolutiva, Instituto de Ecología, Universidad Nacional Autónoma de México, Apartado Postal 70-275, México, D. F., 04510, México
Received for publication October 9, 2001. Accepted for publication January 29, 2002.
| ABSTRACT |
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Key Words: Cucurbita Cucurbitaceae cultivated squash gene flow genetic diversity genetic structure wild gourd
| INTRODUCTION |
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In Mexico, squash (Cucurbita spp.) is a very important traditional crop and a great deal of genetic variability has been maintained. Cucurbita spp. are of great nutritional and economic importance for Mexicans; they are used both as an immature fruit (zucchini type) and as a mature fruit and as seeds (Whitaker and Bohn, 1950
; Lira, 1995
; Merrick, 1995
).
The cultivated species are monoecious, and they are pollinated by various wild specialist bees, mainly Peponapis spp. and Xenoglossa spp. (Hurd, Linsley, and Whitaker, 1971
). In the traditional mesoamerican agricultural systems, called "milpa," maizebeanssquash or maizesquash are cultivated together. In these milpa fields, it is common to find wild relatives growing near the cultivated plants. Thus, it is likely that natural cross-fertilization between wild and cultivated species occurs, and indeed, such gene flow has been documented in maize (Wilkes, 1977
; Doebley, 1990
), beans (Escalante et al., 1994
; Beebe et al., 1997
), and squash (Kirkpatrick and Wilson, 1988
; Wilson, 1990
; Wilson, Lira, and Rodriguez, 1994
).
In the southwestern part of the state of Jalisco, Mexico, the milpa agroecosystem includes cultivated maize (Zea mays L. ssp. mays) and two cultivated taxa of squash, C. argyrosperma Huber ssp. argyrosperma and C. moschata (Duch. ex Lam.) Duch. ex Poir., growing near their wild relatives, Z. mays ssp. parviglumis Iltis & Doebley or teosinte, and the wild gourd Cucurbita argyrosperma ssp. sororia (L.H. Bailey) Merrick & Bates.
Experimental evidence has revealed that the taxa involved in the present study can be crossed to produce fertile seeds (Merrick, 1990
, 1991
; Wessel-Beaver, 2000
). A close relationship exists among C. argyrosperma ssp. argyrosperma (mean diversity [D] = 0.02 [0.000.06]) and C. argyrosperma ssp. sororia populations (D = 0.01 [0.000.06]; Decker, 1986
), although C. moschata populations are more distant (D = 0.24 [0.160.32]; Wilson, 1989
; Wilson, Doebley, and Duvall, 1992
). On the other hand, data on the genetic diversity in extant populations indicate a close relationship between C. argyrosperma ssp. argyrosperma and C. argyrosperma ssp. sororia (average D = 0.03) and greater differentiation between C. argyrosperma ssp. argyrosperma and C. moschata (average D = 0.22; Wilson, 1989
; Merrick, 1991
). A study of genetic diversity in Cucurbita revealed that C. moschata has greater genetic diversity (mean expected heterozygosity, H = 0.052) than C. argyrosperma (0.039), although the sample size was small in both species (820 individuals; with 14 loci) (Decker-Walters et al., 1990
). Decker (1986)
and Decker-Walters et al. (1990)
present evidence that the two species have introgressed. In the common zucchini, the C. pepo L. complex, genetic diversity and heterozygosity (H) are moderately high (D = 0.17 and H = 0.089; Decker and Wilson, 1987
) and alleles from the cultivated species have been found in wild populations. This has been interpreted as evidence of gene flow among wild and cultivated populations (Decker and Wilson, 1987
; Kirkpatrick and Wilson, 1988
; Wilson, 1990
).
Our main objective was to determine the levels of genetic variation within and among taxa of Cucurbita in Jalisco, Mexico, and to analyze their relationships. Specifically, we assessed (1) the levels of gene flow within and among populations of two different species of squash (both of which are cultivated in the traditional milpa agroecosystem) and a wild type that grows in adjacent fields, (2) the distribution of allozyme variation within and among populations of the wild and cultivated squashes, and (3) the genetic relationships among populations of the three taxa.
| MATERIALS AND METHODS |
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Several tray-gel buffer systems were tested to determine which provided the best resolution for each enzyme locus, and several loci of many enzymes were screened to determine which were polymorphic. Alleles and loci were assessed following the techniques outlined in earlier studies of Cucurbita spp. (Decker, 1986
; Decker and Wilson, 1987
; Kirkpatrick and Wilson, 1988
; Decker-Walters et al., 1990
, among others). Putative loci were assigned sequentially, with the most anodally migrating isozyme designated as 1, the next 2, etc. Likewise, alleles were assigned sequentially with the most anodally migrating allele designated as 1, the next 2, etc. Two gel and electrode buffer systems were used to assay the following allozymes: phosphoglucose isomerase (Enzyme Commission number (E.C.) 5.3.1.9, PGI, two loci), leucine aminopeptidase (E.C. 3.4.11.1, LAP, one locus), esterase (E.C. 3.1.1, EST, one locus), and peroxidase (E.C. 1.1.1.7, APX, three loci; cathodal and anodal) in 11% starch gels (375 mL) ran in LiOH buffer pH 8 (Soltis et al., 1983
), at 60 mA for 67 h. We analyzed isocitrate dehydrogenase (E.C. 1.1.1.42, IDH two loci), malate dehydrogenase (E.C. 1.1.1.37, MDH one locus), phosphoglucomutase (E.C. 2.7.5.1, PGM, one locus), and malic enzyme (E.C. 1.1.1.40, ME, one locus) on the same gels run with a histidine-citrate buffer pH 6.5 system (Cardy, Stuber, and Goodman, 1980
) at 30 mA for 78 h. Allozyme markers for 12 enzyme loci for the four taxa were consistent and interpretable.
Data analysis
Allelic frequencies in each population were calculated from isozyme phenotypes. Allelic variation within and across all populations was quantified by calculating the following statistics for each locus in each population: percentage of polymorphic loci (p), polymorphic index (PI; proportion of polymorphic loci per population), mean number of effective alleles per locus (A), mean observed heterozygosity (Ho; direct estimate), Hardy-Weinberg expected heterozygosity (He), and the fixation index (F; Wright, 1965
). All estimates were calculated with BIOSYS (Swofford and Selander, 1981
).
The distribution of genetic variation within and among populations was estimated by calculating Wright's (1951)
F statistics (FST, FIS, and FIT) from variance components using Weir and Cockerham's (1984)
estimators
, f, and F. These tests assume that the populations are in mutation-drift balance and share the same time of divergence from a common ancestor. Here we derive F statistics both within taxa and among all populations of the three taxa. For the second analyses, we must therefore assume that the three taxa share a recent common ancestor and that the time of divergence of each taxa from this ancestor is approximately the same. Given the inter-crossability of the taxa and the high similarity of their isozyme profiles, this is probably a reasonable assumption. The deviation of fixation index (F) from zero for each locus in each population (in total 192 tests; 12 loci per 16 populations) was tested using a chi-square test (Li and Horvitz, 1953
), and 95% confidence intervals (CI) were estimated by 1000 bootstraps with the program TFPGA (Tools for Population Genetic Analyses; Miller, 1997
). For each population in each taxon, the number of loci that exhibited an excess or deficit of heterozygotes based on Hardy-Weinberg (H-W) expectation was noted.
The rate of interpopulation gene flow within taxa and among all populations was estimated using the procedure based on Wright's FST, where FST = (1/4Nem + 1) (Wright, 1951
). This method estimates Nem, which is the average number of migrants into a population per generation. In this case, we used our estimate of
to estimate Nem following Crow and Aoki (1984)
, Nem = [(1/
) 1]/4
, where
= (n/n 1)2, and n = number of subpopulations. The estimate of Nem assumes that there are equal quantities of migration between all populations. Although this assumption is probably not satisfied, given the fact that we have approximately equal numbers of populations per taxa and representatives of each taxa in each locality, making this assumption is also reasonable.
The genetic divergence between populations was determined using Nei's genetic distances (D; Nei, 1978
), which is an index of genetic similarity. Dendograms for all taxa together were constructed using UPGMA (unweighted pair group method using arithmetic means) and the confidence of each node was tested with bootstraps. The majority of the analyses were carried out using the computer program TFPGA (Miller, 1997
), unless indicated otherwise.
| RESULTS |
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2 tests of the deviation of F from the expected value per locus per population, 94 locipopulation combinations had an F value significantly different from zero. Of these 94 tests, 39 were positively different from zero, and 55 were negatively different from zero (
0.05<0.005; Tables 3, 4). Sixty percent of the populations of C. argyrosperma ssp. sororia, 75% of C. moschata, and 50% of C. argyrosperma ssp. argyrosperma had average within-population F values that were significantly negative, indicating an excess of heterozygotes (Table 3). In both subspecies of C. argyrosperma, the mean F values averaged across all populations were positive or nearly zero (0.006 in C. argyrosperma ssp. sororia; 0.046 in C. argyrosperma ssp. argyrosperma), while in C. moschata the average F values were negative (0.174). The number of loci in each Cucurbita population with F values significantly different from zero ranged from three in population CAA7 to 11 in population CAA6 (Table 3). The average number of loci that had F values significantly different from zero was similar in the three taxa (C. argyrosperma ssp. sororia = 6.4, C. argyrosperma ssp. argyrosperma = 5.5, and C. moschata = 6.0; Table 3), although when the F values were calculated over all 12 loci, only one population (CMO12) showed a significant departure from H-W equilibrium (95% CI; data not shown). The loci that exhibit the greatest departure from H-W equilibrium were Apx2 (11 populations) and Pgi2 (16 populations; Table 4).
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Relatedness between populations
Nei's genetic distance between populations of the three taxa ranged from 0.024 to 0.228 (Table 6). The range of mean genetic distances was lower between C. argyrosperma ssp. argyrosperma and C. argyrosperma ssp. sororia = 0.069, than between either subspecies and C. moschata (Table 6). Clustering of populations based on D shows that individuals of both subspecies of C. argyrosperma were interlaced and, with the exception of SL populations, appear to cluster more closely based on locality than on taxonomic identity (Fig. 2), while C. moschata's populations form a clearly separate group with a well-supported basal node (Fig. 2).
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| DISCUSSION |
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Inbreeding
The main genetic effects of inbreeding within populations is to increase the levels of homozygosity relative to those expected under conditions of random mating (Brown, 1979
; Hamrick, 1989
). Thus, comparisons of genotypic frequencies within populations with those expected under H-W equilibrium conditions can be used to detect historical levels of inbreeding or outcrossing in natural populations. In our Cucurbita populations, individual fixation index values showed significant departures from H-W in several cases and most values were slightly negative, indicating a small excess of heterozygotes and little inbreeding (mean FIS = 0.071, not significantly different from 0). These results certainly do not rule out the possibility of occasional selfing, but they do argue against persistent selfing within these populations.
The combination of high genetic diversity within populations, little differentiation among populations, and high levels of gene flow indicate that these species are predominately outcrossing. Kirkpatrick and Wilson (1988)
also found high outcrossing rates and low inbreeding in the cultivated C. pepo and in the weedy C. texana (Scheele) Gray [= C. pepo ssp. overifera (L.) Decker var. texana (Scheele) Filov].
Genetic differentation
There was little genetic differentiation among the taxa. Nei's mean genetic distance values were low, ranging from 0.046 to 0.122. These distance values are lower than other D estimates for Cucurbita and within the range of values reported for conspecific seed plant populations (Decker, 1986
; Decker and Wilson, 1987
; Wilson, 1989
; Merrick, 1991
). For instance, in south-central Africa populations of C. moschata a study by Gwanama, Labuschagne, and Botha (2000)
using random amplified polymorphic DNA (RAPD) markers reported D values from 0.31 to 0.41.
Our values of Wright's FST (average = 0.111) were lower than the reported average for animal-pollinated outcrossing seed plants (Hamrick, 1989
) or for outcrossing cultivated seed plants (Hamrick and Godt, 1997
) (FST mean values = 0.187 and 0.234, respectively). Both the D and the FST values suggest that there is substantial gene flow among populations of the three taxa we studied, as we will discuss later.
Our UPGMA analysis shows the existence of two major groups, Cucurbita argyrosperma (including both subspecies, C. argyrosperma ssp. argyrosperma and C. argyrosperma ssp. sororia) and C. moschata. However, we must caution that the bootstrap values in the tree are low, likely caused by the few differences between Cucurbita populations. In particular, populations of C. argyrosperma ssp. argyrosperma and C. argyrosperma ssp. sororia are more differentiated by locality than taxonomic identity, suggesting that their taxonomic classification should be reconsidered. However, it is possible that the similarity of these subspecies at allozyme loci does not reflect their differences at other loci determining morphological or reproductive characters important for species definition or that high levels of gene flow are eroding differentiation between them. This latter possibility is supported by the observation that the only population of C. argyrosperma that was clearly differentiated from another population was population CAA8 of C. argyrosperma ssp. argyrosperma collected from Tepec. This population occurs in a locality where the wild gourd, C. argyrosperma ssp. sororia, is not present. More genetic analyses and reproductive studies would be required before a firm conclusion could be reached about the taxonomic status of these two subspecies.
The distribution of allozyme variation in these three Cucurbita taxa includes high genetic variation within populations and low divergence among populations, consistent with the hypothesis that the taxa share a recent common ancestor and that there is ongoing gene flow between them. Our observation of homozygote deficiency in some populations could be due to high outcrossing rates or mating among genetically different individuals in large populations (disassortative mating) or because gene flow introduces variation into populations before random mating balances it. Cucurbita argyrosperma ssp. sororia, C. argyrosperma ssp. argyrosperma, and C. moschata exist as extensive populations throughout the Jalisco region; they are often cultivated in adjacent plots, and the total number of individuals can range from a few hundred to several thousand. Given that several pollinating bee species move among the plants in the plots, visiting all Cucurbita taxa simultaneously (data not shown), high levels of interpopulation and intertaxa gene flow is not surprising.
Gene flow within wild-cultivated plant complex
Gene flow can be an important evolutionary force. A small amount of gene flow is capable of counteracting other evolutionary forces such as mutation, drift, and selection (Slatkin, 1987
). Previous studies have shown evidence of gene flow between populations of C. pepo and C. texana (Kirkpatrick and Wilson, 1988
) and C. argyrosperma with C. fraterna L. H. Bailey (Wilson, Lira, and Rodriguez, 1994
). The low values of FST reported here suggest that there is exchange of genes among populations, even among those located several kilometers apart within the agroecosystem. Our very low FST estimates are lower than the average reported for outcrossing seed plants (Hamrick, 1989
). In particular, we found high rates of gene flow in San Miguel among populations within 1.5 km of each other.
The great potential of pollen dispersal is likely to contribute to the high rates of gene flow among cultivated and weedy Cucurbita populations. Kirkpatrick and Wilson (1988)
found outcrossing rates of 5% in C. pepo and C. texana, at a distance of 1300 m. Arias and Rieseberg (1994)
demonstrated gene dispersal from 2 to 7% at 800 m and 2% at 1000 m in the Helianthus annuus crop/weed complex. Jenczewski, Prosperi, and Ronfort (1999)
reported evidence for the occurrence of crop/weed gene flow in Medicago sativa. In addition, in a separate study we found that 62% of farmers exchange squash seeds among themselves (Montes-Hernández, Merrick, and Eguiarte, unpublished manuscript).
One might expect local farmers to keep C. argyrosperma ssp. sororia, C. argyrosperma ssp. argyrosperma, and C. moschata distinct by selection of fruits and seeds to sow in the next season. However, it is possible that squash farmers could have difficulty in distinguishing among the taxa if one or more squash fruits are F1 or part of the progeny of a cross between a landrace and a weedy type, particularly with C. argyrosperma ssp. argyrosperma (José Elizondo Anguiano, squash farmer from El Chante, personal communication).
Although genetic variation of many species could be reduced by human activities, some crop species have increased genetic variation due to certain selective practices inherent in their cultivation (Bye, 1993
; Hernández, 1993
). The continuous presence of wild populations of C. argyrosperma ssp. sororia and the milpa tradition of sowing together seeds of C. argyrosperma ssp. argyrosperma and C. moschata with corn adjacent to these wild populations probably both contribute to the high levels of gene flow observed here.
Relevance in the light of release of genetically modified organisms
Gene flow between domesticated plants and their wild relatives may have two potentially harmful consequences, the evolution of increased weediness and the increased likelihood of extinction of wild relatives. Recent concern exists for the possibility of gene transfer between transgenic cultivated species and their wild relatives (Ellstrand, Prentice, and Hancock, 1999
). However, before this risk can be assessed, studies that examine the extent of introgression between the wild and transgenic plants are necessary (Payne, 1997
). Our study suggests that crop to weed gene flow regularly occurs between wild and cultivated populations of squashes in Mexico. Mexico is the origin and center of diversity for Cucurbita, and we need to be extremely cautious in the field testing and wide-scale usage of transgenic plants of squash in Mexico.
| FOOTNOTES |
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4 Author for reprint requests (smontes{at}miranda.ecologia.unam.mx)
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