|
|
||||||||
American Journal of Botany, Vol 85, 285, Copyright © 1998 by Botanical Society of America, Inc.
SYSTEMATICS |
Q Xiang, DE Soltis and PS Soltis
Phylogenetic relationships were inferred using nucleotide sequences of the chloroplast gene matK for members of Cornales, a well-supported monophyletic group comprising Cornaceae and close relatives. The shortest trees resulting from this analysis were highly concordant with those based on previous phylogenetic analysis of rbcL sequences. Analysis of a combined matK and rbcL sequence data set (a total of 2652 bp [base pairs]) provided greater resolution of relationships and higher internal support for clades compared to the individual data sets. Four major clades (most inclusive monophyletic groups) of Cornales are indicated by both sets of genes: (1) Cornus-Alangium, (2) nyssoids (Nyssa-Davidia-Camptotheca)- mastixioids (Mastixia, Diplopanax), (3) Curtisia, and (4) Hydrangeaceae-Loasaceae. The combined evidence indicates that clades 2 and 3 are sisters, with clade 4 sister to the remainder of Cornales. These relationships are also supported by other lines of evidence, including synapomorphies in fruit and pollen morphology and gynoecial vasculature. Comparisons of matK and rbcL sequences based on one of the most parsimonious rbcL-matK trees indicate that matK has a much higher A-T content (66.9% in matK vs. 55.8% in rbcL) and a lower transition:transversion ratio (1.23 in matK vs. 2.21 in rbcL). The total number of nucleotide substitutions per site for matK is 2.1 times that of rbcL in Cornales. These findings are similar to recent comparisons of matK and rbcL in other dicots. Variable sites of matK are almost evenly distributed among the three codon positions (1.0:1.0:1.3), whereas variable sites of rbcL are mostly at the third position (1.8:1.0 :7.5). Among- lineages rates of nucleotide substitutions in rbcL are basically homogeneous throughout Cornales, but are more heterogeneous in matK.
This article has been cited by other articles:
![]() |
J. V. Freudenstein and D. M. Senyo Relationships and evolution of matK in a group of leafless orchids (Corallorhiza and Corallorhizinae; Orchidaceae: Epidendroideae) Am. J. Botany, April 1, 2008; 95(4): 498 - 505. [Abstract] [Full Text] [PDF] |
||||
![]() |
R. Lahaye, L. Civeyrel, T. Speck, and N. P. Rowe Evolution of shrub-like growth forms in the lianoid subfamily Secamonoideae (Apocynaceae s.l.) of Madagascar: phylogeny, biomechanics, and development Am. J. Botany, August 1, 2005; 92(8): 1381 - 1396. [Abstract] [Full Text] [PDF] |
||||
![]() |
R. Samuel, H. Kathriarachchi, P. Hoffmann, M. H. J. Barfuss, K. J. Wurdack, C. C. Davis, and M. W. Chase Molecular phylogenetics of Phyllanthaceae: evidence from plastid MATK and nuclear PHYC sequences Am. J. Botany, January 1, 2005; 92(1): 132 - 141. [Abstract] [Full Text] [PDF] |
||||
![]() |
W. S. Judd and R. G. Olmstead A survey of tricolpate (eudicot) phylogenetic relationships Am. J. Botany, September 1, 2004; 91(10): 1627 - 1644. [Abstract] [Full Text] [PDF] |
||||
![]() |
D. T. Karlson, Q.-Y. Xiang, V. E. Stirm, A.M. Shirazi, and E. N. Ashworth Phylogenetic Analyses in Cornus Substantiate Ancestry of Xylem Supercooling Freezing Behavior and Reveal Lineage of Desiccation Related Proteins Plant Physiology, July 1, 2004; 135(3): 1654 - 1665. [Abstract] [Full Text] [PDF] |
||||
![]() |
K. W. Hilu, T. Borsch, K. Muller, D. E. Soltis, P. S. Soltis, V. Savolainen, M. W. Chase, M. P. Powell, L. A. Alice, R. Evans, et al. Angiosperm phylogeny based on matK sequence information Am. J. Botany, December 1, 2003; 90(12): 1758 - 1776. [Abstract] [Full Text] [PDF] |
||||
![]() |
C. Fan and Q.-Y. Xiang Phylogenetic analyses of Cornales based on 26S rRNA and combined 26S rDNA-MATK-RBCL sequence data Am. J. Botany, September 1, 2003; 90(9): 1357 - 1372. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. Hufford, M. M. McMahon, A. M. Sherwood, G. Reeves, and M. W. Chase The major clades of Loasaceae: phylogenetic analysis using the plastid matK and trnL-trnF regions Am. J. Botany, August 1, 2003; 90(8): 1215 - 1228. [Abstract] [Full Text] [PDF] |
||||
![]() |
G. A. Salazar, M. W. Chase, M. A. Soto Arenas, and M. Ingrouille Phylogenetics of Cranichideae with emphasis on Spiranthinae (Orchidaceae, Orchidoideae): evidence from plastid and nuclear DNA sequences Am. J. Botany, May 1, 2003; 90(5): 777 - 795. [Abstract] [Full Text] [PDF] |
||||
![]() |
R. Samuel, T. F. Stuessy, K. Tremetsberger, C. M. Baeza, and S. Siljak-Yakovlev Phylogenetic relationships among species of Hypochaeris (Asteraceae, Cichorieae) based on ITS, plastid trnL intron, trnL-F spacer, and matK sequences Am. J. Botany, March 1, 2003; 90(3): 496 - 507. [Abstract] [Full Text] [PDF] |
||||
![]() |
L. M. Prince and C. R. Parks Phylogenetic relationships of Theaceae inferred from chloroplast DNA sequence data Am. J. Botany, December 1, 2001; 88(12): 2309 - 2320. [Abstract] [Full Text] [PDF] |
||||
![]() |
K. M. Cameron, M. W. Chase, W. R. Anderson, and H. G. Hills Molecular systematics of Malpighiaceae: evidence from plastid rbcL and matK sequences Am. J. Botany, October 1, 2001; 88(10): 1847 - 1862. [Abstract] [Full Text] [PDF] |
||||
![]() |
B. Gravendeel, M. W. Chase, E. F. de Vogel, M. C. Roos, T. H. M. Mes, and K. Bachmann Molecular phylogeny of Coelogyne (Epidendroideae; Orchidaceae) based on plastid RFLPS, matK, and nuclear ribosomal ITS sequences: evidence for polyphyly Am. J. Botany, October 1, 2001; 88(10): 1915 - 1927. [Abstract] [Full Text] [PDF] |
||||
![]() |
G. T. Chandler, R. J. Bayer, and M. D. Crisp A molecular phylogeny of the endemic Australian genus Gastrolobium (Fabaceae: Mirbelieae) and allied genera using chloroplast and nuclear markers Am. J. Botany, September 1, 2001; 88(9): 1675 - 1687. [Abstract] [Full Text] |
||||
![]() |
C. Fan Phylogenetic relationships within Cornus (Cornaceae) based on 26S rDNA sequences Am. J. Botany, June 1, 2001; 88(6): 1131 - 1138. [Abstract] [Full Text] [PDF] |
||||
![]() |
M. Koch, B. Haubold, and T. Mitchell-Olds Molecular systematics of the Brassicaceae: evidence from coding plastidic matK and nuclear Chs sequences Am. J. Botany, March 1, 2001; 88(3): 534 - 544. [Abstract] [Full Text] |
||||
![]() |
M. L. Moody, L. Hufford, D. E. Soltis, and P. S. Soltis Phylogenetic relationships of Loasaceae subfamily Gronovioideae inferred from matK and ITS sequence data Am. J. Botany, February 1, 2001; 88(2): 326 - 336. [Abstract] [Full Text] |
||||
![]() |
W. M. Whitten, N. H. Williams, and M. W. Chase Subtribal and generic relationships of Maxillarieae (Orchidaceae) with emphasis on Stanhopeinae: combined molecular evidence Am. J. Botany, December 1, 2000; 87(12): 1842 - 1856. [Abstract] [Full Text] |
||||
![]() |
N. D. Young and C. W. dePamphilis Purifying Selection Detected in the Plastid Gene matK and Flanking Ribozyme Regions Within a Group II Intron of Nonphotosynthetic Plants Mol. Biol. Evol., December 1, 2000; 17(12): 1933 - 1941. [Abstract] [Full Text] [PDF] |
||||
![]() |
S. Noshiro and P. Baas Latitudinal trends in wood anatomy within species and genera: case study in Cornus s.l. (Cornaceae) Am. J. Botany, October 1, 2000; 87(10): 1495 - 1506. [Abstract] [Full Text] |
||||
![]() |
M. Weigend, J. Kufer, and A. A. Müller Phytochemistry and the systematics and ecology of Loasaceae and Gronoviaceae (Loasales) Am. J. Botany, August 1, 2000; 87(8): 1202 - 1210. [Abstract] [Full Text] |
||||
![]() |
K. W. Hilu and L. A. Alice Evolutionary implications of matK indels in Poaceae Am. J. Botany, December 1, 1999; 86(12): 1735 - 1741. [Abstract] [Full Text] |
||||
![]() |
X.-R. Wang, Y. Tsumura, H. Yoshimaru, K. Nagasaka, and A. E. Szmidt Phylogenetic relationships of Eurasian pines (Pinus, Pinaceae) based on chloroplast rbcL, MATK, RPL20-RPS18 spacer, and TRNV intron sequences Am. J. Botany, December 1, 1999; 86(12): 1742 - 1753. [Abstract] [Full Text] |
||||
| HOME | HELP | FEEDBACK | SUBSCRIPTIONS | ARCHIVE | SEARCH | TABLE OF CONTENTS |